Key Points
- Baseline bloods for most referrals: FBC, CRP, ESR, albumin, iron studies, coeliac serology (on gluten-containing diet), LFTs
- Faecal calprotectin is the key non-invasive stool marker to differentiate IBD from functional GI disorders
- Stool MCS and parasites should be sent to exclude infectious causes before referral
- Growth charting (weight, height, BMI) is essential; faltering growth is a red flag for organic disease
- Imaging and endoscopy are typically deferred to the paediatric GI specialist
This is a broad question, as the workup varies considerably depending on the presenting complaint. Here's a structured overview of the investigations commonly considered before or alongside a paediatric GI referral, organised by clinical presentation.
Baseline Investigations (Applicable to Most Referrals)
Bloods
- FBC with differential: looking for anaemia, thrombocytosis, leucocytosis
- Inflammatory markers: CRP and ESR
- Albumin (hypoalbuminaemia is common in Crohn's disease)
- Iron studies: ferritin, transferrin saturation
- Coeliac serology: tissue transglutaminase (tTG) IgA + total IgA (on a gluten-containing diet)
- LFTs including transaminases and GGT
Stool
- Faecal calprotectin (FC): the most useful non-invasive marker to distinguish organic from functional GI disease; a normal FC substantially reduces the likelihood of IBD
- Stool culture: to exclude Salmonella, Shigella, Yersinia, Campylobacter
- Stool for C. difficile toxin
- Stool microscopy for ova, cysts and parasites (especially Giardia)
Growth Assessment
- Plot weight, height, and BMI on percentile charts
- Weight loss, faltering growth, or declining growth velocity are red flags warranting further investigation and warrant more urgent referral
Physical Examination
- Perianal examination: skin tags (particularly if inflamed, multiple, or in atypical positions), fistulae, or abscess may indicate Crohn's disease
- Abdominal examination: hepatosplenomegaly, masses, tenderness
- Extra-intestinal features: oral ulcers, erythema nodosum, joint involvement, uveitis
Presentation-Specific Workup
Suspected IBD (chronic diarrhoea, bloody stools, abdominal pain, weight loss)
- All baseline bloods and stool tests above
- FC is particularly valuable here
- Endoscopy (ileocolonoscopy + EGD with biopsies) is the gold standard and is typically arranged by the GI specialist
- MRI enterography (MRE) for small bowel assessment: sensitive and specific, avoids radiation; should supersede barium studies where available
Iron Deficiency Anaemia
- FBC, iron studies, ESR/CRP, coeliac screen
- Consider nutritional assessment and dietitian referral if dietary intake is inadequate
Chronic Abdominal Pain (without alarm features)
- Baseline bloods and coeliac serology
- FC to help exclude IBD
- Stool MCS/OCP
- Consider H. pylori testing in appropriate populations
- Note: In functional abdominal pain disorders (Rome IV criteria) without red flags, extensive investigation has low diagnostic yield
Liver Disease
- LFTs (ALT, AST, GGT, bilirubin, albumin)
- INR, ammonia
- Age-based aetiological workup (viral serology, metabolic screen, autoimmune markers)
- Abdominal ultrasound
Pancreatic Disease
- Amylase and lipase
- Abdominal ultrasound is often the initial imaging modality
- CT or MRCP may be required for further characterisation
Red Flags Warranting Urgent or Emergency Referral
- Acute significant GI bleeding / melaena
- Acute liver failure (INR >1.5)
- Acute pancreatitis
- Caustic ingestion
- Oesophageal foreign body / food impaction
- Acute diarrhoea with dehydration
| Category | Key Investigations |
|---|---|
| Bloods (most referrals) | FBC, CRP, ESR, albumin, iron studies, coeliac screen, LFTs |
| Stool | Faecal calprotectin, MCS, O&P, C. difficile toxin |
| Growth | Weight, height, BMI plotted on percentile charts |
| Suspected IBD | Above + ileocolonoscopy, EGD with biopsies, MRE |
| Liver | LFTs, INR, ammonia, US, age-based aetiological testing |
| Pancreas | Amylase, lipase, US +/- MRCP |
See sources cited
- [PDF] Provincial Pediatric Gastroenterology Referral Quick Reference
- Irritable Bowel Syndrome and Inflammatory Bowel Disease: Symptoms, Workup and when to Refer to a GI Specialist | Children's Hospital of Philadelphia
- [PDF] ESPGHAN Revised Porto Criteria for the Diagnosis of Inflammatory ...
- Promoting early testing and appropriate referral to reduce diagnostic delay for children with suspected inflammatory bowel disease, a narrative review - PMC
- Inflammatory Bowel Disease in Children: Current Diagnosis and Treatment Strategies - PMC
- [PDF] Endoscopy in Pediatric Inflammatory Bowel Disease - ESPGHAN
- Systematic review: MRI enterography for... : Alimentary Pharmacology & Therapeutics
- Endoscopy and noninvasive tests in pediatric disorders of gut–brain interaction: A multicenter retrospective study of the Italian Society of Pediatric Gastroenterology, Hepatology, and Nutrition - PMC
- Utility of Diagnostic Tests in Children With Functional Abdominal Pain Disorders - Gastroenterology & Hepatology
- [PDF] North American Society for Pediatric Gastroenterology, Hepatology ...
- [PDF] Specialized Imaging and Procedures in Pediatric Pancreatology
Evidence Validator
Heidi Clinical Team5 Contributions
Leolyn Günther
General Practice / Family Medicine•AU

