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What additional work up should be considered for a pediatric GI consult?

Key Points

  • Baseline bloods for most referrals: FBC, CRP, ESR, albumin, iron studies, coeliac serology (on gluten-containing diet), LFTs
  • Faecal calprotectin is the key non-invasive stool marker to differentiate IBD from functional GI disorders
  • Stool MCS and parasites should be sent to exclude infectious causes before referral
  • Growth charting (weight, height, BMI) is essential; faltering growth is a red flag for organic disease
  • Imaging and endoscopy are typically deferred to the paediatric GI specialist

This is a broad question, as the workup varies considerably depending on the presenting complaint. Here's a structured overview of the investigations commonly considered before or alongside a paediatric GI referral, organised by clinical presentation.

Baseline Investigations (Applicable to Most Referrals)

Bloods

  • FBC with differential: looking for anaemia, thrombocytosis, leucocytosis
  • Inflammatory markers: CRP and ESR
  • Albumin (hypoalbuminaemia is common in Crohn's disease)
  • Iron studies: ferritin, transferrin saturation
  • Coeliac serology: tissue transglutaminase (tTG) IgA + total IgA (on a gluten-containing diet)
  • LFTs including transaminases and GGT

Stool

  • Faecal calprotectin (FC): the most useful non-invasive marker to distinguish organic from functional GI disease; a normal FC substantially reduces the likelihood of IBD
  • Stool culture: to exclude Salmonella, Shigella, Yersinia, Campylobacter
  • Stool for C. difficile toxin
  • Stool microscopy for ova, cysts and parasites (especially Giardia)

Growth Assessment

  • Plot weight, height, and BMI on percentile charts
  • Weight loss, faltering growth, or declining growth velocity are red flags warranting further investigation and warrant more urgent referral

Physical Examination

  • Perianal examination: skin tags (particularly if inflamed, multiple, or in atypical positions), fistulae, or abscess may indicate Crohn's disease
  • Abdominal examination: hepatosplenomegaly, masses, tenderness
  • Extra-intestinal features: oral ulcers, erythema nodosum, joint involvement, uveitis

Presentation-Specific Workup

Suspected IBD (chronic diarrhoea, bloody stools, abdominal pain, weight loss)

  • All baseline bloods and stool tests above
  • FC is particularly valuable here
  • Endoscopy (ileocolonoscopy + EGD with biopsies) is the gold standard and is typically arranged by the GI specialist
  • MRI enterography (MRE) for small bowel assessment: sensitive and specific, avoids radiation; should supersede barium studies where available

Iron Deficiency Anaemia

  • FBC, iron studies, ESR/CRP, coeliac screen
  • Consider nutritional assessment and dietitian referral if dietary intake is inadequate

Chronic Abdominal Pain (without alarm features)

  • Baseline bloods and coeliac serology
  • FC to help exclude IBD
  • Stool MCS/OCP
  • Consider H. pylori testing in appropriate populations
  • Note: In functional abdominal pain disorders (Rome IV criteria) without red flags, extensive investigation has low diagnostic yield

Liver Disease

  • LFTs (ALT, AST, GGT, bilirubin, albumin)
  • INR, ammonia
  • Age-based aetiological workup (viral serology, metabolic screen, autoimmune markers)
  • Abdominal ultrasound

Pancreatic Disease

  • Amylase and lipase
  • Abdominal ultrasound is often the initial imaging modality
  • CT or MRCP may be required for further characterisation

Red Flags Warranting Urgent or Emergency Referral

  • Acute significant GI bleeding / melaena
  • Acute liver failure (INR >1.5)
  • Acute pancreatitis
  • Caustic ingestion
  • Oesophageal foreign body / food impaction
  • Acute diarrhoea with dehydration
CategoryKey Investigations
Bloods (most referrals)FBC, CRP, ESR, albumin, iron studies, coeliac screen, LFTs
StoolFaecal calprotectin, MCS, O&P, C. difficile toxin
GrowthWeight, height, BMI plotted on percentile charts
Suspected IBDAbove + ileocolonoscopy, EGD with biopsies, MRE
LiverLFTs, INR, ammonia, US, age-based aetiological testing
PancreasAmylase, lipase, US +/- MRCP
See sources cited
  1. [PDF] Provincial Pediatric Gastroenterology Referral Quick Reference
  2. Irritable Bowel Syndrome and Inflammatory Bowel Disease: Symptoms, Workup and when to Refer to a GI Specialist | Children's Hospital of Philadelphia
  3. [PDF] ESPGHAN Revised Porto Criteria for the Diagnosis of Inflammatory ...
  4. Promoting early testing and appropriate referral to reduce diagnostic delay for children with suspected inflammatory bowel disease, a narrative review - PMC
  5. Inflammatory Bowel Disease in Children: Current Diagnosis and Treatment Strategies - PMC
  6. [PDF] Endoscopy in Pediatric Inflammatory Bowel Disease - ESPGHAN
  7. Systematic review: MRI enterography for... : Alimentary Pharmacology & Therapeutics
  8. Endoscopy and noninvasive tests in pediatric disorders of gut–brain interaction: A multicenter retrospective study of the Italian Society of Pediatric Gastroenterology, Hepatology, and Nutrition - PMC
  9. Utility of Diagnostic Tests in Children With Functional Abdominal Pain Disorders - Gastroenterology & Hepatology
  10. [PDF] North American Society for Pediatric Gastroenterology, Hepatology ...
  11. [PDF] Specialized Imaging and Procedures in Pediatric Pancreatology

Evidence Validator

Heidi Clinical Team5 Contributions

Leolyn Günther

General Practice / Family Medicine•AU
Validated May 12, 2026Updated May 12, 2026

Tags:

  • General Practice / Family Medicine
  • pediatric gi
  • Consultation Support & Question Prompts
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